PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.FR0NA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 116aa    MW: 13479.5 Da    PI: 10.8712
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.FR0NAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.81.2e-2026175128
          NAM  75 nratksgyWkatgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  nr+tksgyWkatg+dk+++s+      +++ vg++ktLvfy+g++p+g++t+W+m eyrl
  Araip.FR0NA   2 NRITKSGYWKATGSDKRIISTscnnnnNSNIVGIRKTLVFYHGKSPNGSRTHWIMREYRL 61 
                  89*****************998887777777***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.319187IPR003441NAC domain
SuperFamilySSF1019413.14E-25287IPR003441NAC domain
PfamPF023657.7E-10261IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MNRITKSGYW KATGSDKRII STSCNNNNNS NIVGIRKTLV FYHGKSPNGS RTHWIMREYR  60
LVTTPSNSSQ KYVEDLGNWV LCRIFKKKRS IESQHHMVNN KINNVVEILI IFHNVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-2329293173NAC domain-containing protein 19
3swm_B8e-2329293173NAC domain-containing protein 19
3swm_C8e-2329293173NAC domain-containing protein 19
3swm_D8e-2329293173NAC domain-containing protein 19
3swp_A8e-2329293173NAC domain-containing protein 19
3swp_B8e-2329293173NAC domain-containing protein 19
3swp_C8e-2329293173NAC domain-containing protein 19
3swp_D8e-2329293173NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016169425.12e-73PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 83
SwissprotQ9FY933e-25NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0B2QA141e-35A0A0B2QA14_GLYSO; NAC domain-containing protein 29
TrEMBLI1KP451e-35I1KP45_SOYBN; Uncharacterized protein
STRINGGLYMA08G01280.13e-35(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.11e-23NAC domain containing protein 32